RetrogeneDB ID: | retro_sscr_257 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 11:4423263..4423646(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL22 | ||
Ensembl ID: | ENSSSCG00000003367 | ||
Aliases: | HBP15/L22, Rpl22 | ||
Description: | Sus scrofa heparin binding protein (HBP15/L22), mRNA. [Source:RefSeq mRNA;Acc:NM_213987] |
Percent Identity: | 70.23 % |
Parental protein coverage: | 98.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAPVKKLVAK--GGK-KKKQVLKFTLDCTHPVEDGIMDAA-NFEQFLQERIKVNGKAGNLGGG-VVTIER |
MAPVK.LVAK..GG..KKK..L.F.L..TH.VEDGI.DAA..FE.FLQERIKVNGKAG.LGGG...TIER | |
Retrocopy | MAPVKTLVAKGEGGQ<KKKPSLRFSLNGTHLVEDGIVDAA>HFERFLQERIKVNGKAGTLGGG<GLTIER |
Parental | SKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDEEEEED |
SKSKI.VTSEV....R....LTK.YL.KN.LRDWL.V.ANSK.SYE.RYFQI.QDEEEE.. | |
Retrocopy | SKSKIAVTSEVSLPRRCVG*LTKTYLDKNSLRDWLPVSANSKGSYE*RYFQIHQDEEEEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 31 .72 RPM |
SRP014902_testis | 0 .00 RPM | 129 .56 RPM |
SRP018288_heart | 0 .00 RPM | 193 .96 RPM |
SRP018288_kidney | 0 .00 RPM | 122 .74 RPM |
SRP018288_liver | 0 .00 RPM | 118 .65 RPM |
SRP018288_lung | 0 .00 RPM | 40 .02 RPM |
SRP018856_adipose | 0 .00 RPM | 278 .10 RPM |
SRP035408_brain | 0 .00 RPM | 238 .20 RPM |
SRP035408_liver | 0 .00 RPM | 280 .14 RPM |