Parental gene:

RPL22, ENSSSCG00000003367

Aliases:HBP15/L22, Rpl22
Description:Sus scrofa heparin binding protein (HBP15/L22), mRNA. [Source:RefSeq mRNA;Acc:NM_213987]
Organism:Pig (Sus scrofa)
Coordinates:6:61999955..62009132(-)


>ENSSSCG00000003367
ATGGCGCCTGTGAAAAAGCTTGTGGCGAAGGGGGGCAAAAAAAAGAAGCAGGTTCTCAAGTTCACTCTTGATTGCACGCA
CCCAGTGGAAGATGGAATCATGGATGCGGCCAATTTTGAACAGTTTCTTCAGGAAAGAATCAAAGTGAATGGGAAAGCTG
GAAACCTCGGAGGAGGGGTTGTAACAATCGAGAGAAGCAAAAGCAAGATCACTGTAACTTCCGAGGTGCCTTTTTCCAAA
AGGTATTTGAAATATCTCACCAAAAAGTATTTGAAGAAGAATAACCTACGTGACTGGTTACGTGTCGTTGCTAACAGCAA
AGAGAGCTATGAATTACGCTACTTCCAGATTAATCAGGATGAAGAGGAGGAGGAAGATGAGGATTGA

Library Parental gene expression (RPM)
SRP014902_placenta 31 .72 RPM
SRP014902_testis 129 .56 RPM
SRP018856_adipose 278 .10 RPM
SRP018288_kidney 122 .74 RPM
SRP018288_lung 40 .02 RPM
SRP018288_liver 118 .65 RPM
SRP018288_heart 193 .96 RPM
SRP035408_liver 280 .14 RPM
SRP035408_brain 238 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009864 ortholog_one2one 7 retrogenes
retro_amel_1219, retro_amel_1247, retro_amel_1775, retro_amel_1793, retro_amel_369, retro_amel_830, retro_amel_870,
Bos taurus ENSBTAG00000014423 ortholog_one2one 4 retrogenes
retro_btau_1491, retro_btau_566, retro_btau_694, retro_btau_892,
Choloepus hoffmanni ENSCHOG00000007477 ortholog_one2one 2 retrogenes
retro_chof_1785, retro_chof_2537,
Callithrix jacchus ENSCJAG00000000132 ortholog_one2one 12 retrogenes
retro_cjac_1032, retro_cjac_1055, retro_cjac_1257, retro_cjac_1301, retro_cjac_2352, retro_cjac_2436, retro_cjac_2874, retro_cjac_2954, retro_cjac_3925, retro_cjac_472, retro_cjac_611, retro_cjac_867,
Cavia porcellus ENSCPOG00000020139 possible_ortholog 2 retrogenes
retro_cpor_825, retro_cpor_837,
Dasypus novemcinctus ENSDNOG00000013166 ortholog_one2one 8 retrogenes
retro_dnov_1282, retro_dnov_1523, retro_dnov_2043, retro_dnov_2126, retro_dnov_38, retro_dnov_382, retro_dnov_425, retro_dnov_567,
Felis catus ENSFCAG00000006320 ortholog_one2one 3 retrogenes
retro_fcat_1591, retro_fcat_1656, retro_fcat_1715,
Homo sapiens ENSG00000116251 ortholog_one2one 16 retrogenes
retro_hsap_1162, retro_hsap_1299, retro_hsap_1445, retro_hsap_1720, retro_hsap_2136, retro_hsap_2138, retro_hsap_2142, retro_hsap_2306, retro_hsap_2315, retro_hsap_349, retro_hsap_3814, retro_hsap_485, retro_hsap_4865, retro_hsap_4909, retro_hsap_600, retro_hsap_726,
Gorilla gorilla ENSGGOG00000027739 possible_ortholog 10 retrogenes
retro_ggor_1111, retro_ggor_1652, retro_ggor_1655, retro_ggor_1708, retro_ggor_1757, retro_ggor_2268, retro_ggor_2567, retro_ggor_37, retro_ggor_531, retro_ggor_613,
Loxodonta africana ENSLAFG00000006352 ortholog_one2one 5 retrogenes
retro_lafr_1100, retro_lafr_380, retro_lafr_649, retro_lafr_981, retro_lafr_993,
Macropus eugenii ENSMEUG00000008801 possible_ortholog 1 retrogene
retro_meug_65,
Macaca mulatta ENSMMUG00000018347 possible_ortholog 12 retrogenes
retro_mmul_1004, retro_mmul_1044, retro_mmul_1047, retro_mmul_1512, retro_mmul_2209, retro_mmul_2264, retro_mmul_2467, retro_mmul_2601, retro_mmul_271, retro_mmul_445, retro_mmul_469, retro_mmul_80,
Monodelphis domestica ENSMODG00000006225 possible_ortholog 1 retrogene
retro_mdom_1003,
Mustela putorius furo ENSMPUG00000007087 ortholog_one2many 6 retrogenes
retro_mputfur_1074, retro_mputfur_1277, retro_mputfur_134, retro_mputfur_1433, retro_mputfur_578, retro_mputfur_873,
Mus musculus ENSMUSG00000028936 ortholog_one2one 5 retrogenes
retro_mmus_1883, retro_mmus_1906, retro_mmus_2123, retro_mmus_2459, retro_mmus_3171,
Nomascus leucogenys ENSNLEG00000010337 ortholog_one2one 10 retrogenes
retro_nleu_1309, retro_nleu_2354, retro_nleu_2367, retro_nleu_2509, retro_nleu_2747, retro_nleu_2772, retro_nleu_2783, retro_nleu_2881, retro_nleu_2946, retro_nleu_3003,
Otolemur garnettii ENSOGAG00000014776 ortholog_one2one 7 retrogenes
retro_ogar_1116, retro_ogar_1415, retro_ogar_1418, retro_ogar_2188, retro_ogar_2979, retro_ogar_399, retro_ogar_917,
Pongo abelii ENSPPYG00000001951 ortholog_one2one 11 retrogenes
retro_pabe_1196, retro_pabe_1213, retro_pabe_1435, retro_pabe_166, retro_pabe_248, retro_pabe_3114, retro_pabe_349, retro_pabe_3782, retro_pabe_3817, retro_pabe_590, retro_pabe_966,
Pan troglodytes ENSPTRG00000000076 ortholog_one2one 14 retrogenes
retro_ptro_1562, retro_ptro_1563, retro_ptro_1630, retro_ptro_1690, retro_ptro_2596, retro_ptro_275, retro_ptro_3056, retro_ptro_3240, retro_ptro_365, retro_ptro_502, retro_ptro_517, retro_ptro_795, retro_ptro_950, retro_ptro_984,
Rattus norvegicus ENSRNOG00000011104 ortholog_one2one 5 retrogenes
retro_rnor_1315, retro_rnor_1687, retro_rnor_2089, retro_rnor_2149, retro_rnor_439,
Sarcophilus harrisii ENSSHAG00000018731 possible_ortholog 1 retrogene
retro_shar_597,
Sus scrofa ENSSSCG00000027441 within_species_paralog 5 retrogenes
retro_sscr_1039, retro_sscr_129, retro_sscr_141, retro_sscr_85, retro_sscr_860,
Ictidomys tridecemlineatus ENSSTOG00000002832 possible_ortholog 4 retrogenes
retro_itri_1250, retro_itri_1326, retro_itri_1543, retro_itri_407,
Tupaia belangeri ENSTBEG00000009172 ortholog_one2one 33 retrogenes
retro_tbel_1047, retro_tbel_1181, retro_tbel_1263, retro_tbel_1422, retro_tbel_1773, retro_tbel_1951, retro_tbel_2121, retro_tbel_2182, retro_tbel_2231, retro_tbel_2429, retro_tbel_2452, retro_tbel_2801, retro_tbel_2923, retro_tbel_3090, retro_tbel_3160, retro_tbel_3265, retro_tbel_3362, retro_tbel_3482, retro_tbel_3719, retro_tbel_3885, retro_tbel_3960, retro_tbel_397, retro_tbel_4199, retro_tbel_4225, retro_tbel_4386, retro_tbel_4437, retro_tbel_4607, retro_tbel_504, retro_tbel_582, retro_tbel_659, retro_tbel_680, retro_tbel_755, retro_tbel_920,
Tarsius syrichta ENSTSYG00000003649 possible_ortholog 32 retrogenes
retro_tsyr_1043, retro_tsyr_1086, retro_tsyr_1140, retro_tsyr_1163, retro_tsyr_1197, retro_tsyr_1259, retro_tsyr_1304, retro_tsyr_1338, retro_tsyr_1350, retro_tsyr_1524, retro_tsyr_1587, retro_tsyr_1788, retro_tsyr_1966, retro_tsyr_1978, retro_tsyr_200, retro_tsyr_2075, retro_tsyr_2101, retro_tsyr_2114, retro_tsyr_219, retro_tsyr_242, retro_tsyr_337, retro_tsyr_377, retro_tsyr_392, retro_tsyr_504, retro_tsyr_688, retro_tsyr_788, retro_tsyr_828, retro_tsyr_881, retro_tsyr_969, retro_tsyr_972, retro_tsyr_973, retro_tsyr_983,
Tursiops truncatus ENSTTRG00000010488 ortholog_one2one 8 retrogenes
retro_ttru_1268, retro_ttru_147, retro_ttru_1519, retro_ttru_1564, retro_ttru_1739, retro_ttru_413, retro_ttru_714, retro_ttru_871,
Vicugna pacos ENSVPAG00000009466 ortholog_one2one 1 retrogene
retro_vpac_330,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_257 70.23 98.44
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2. retro_sscr_276 70.23 98.44
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3. retro_sscr_497 76.47 65.62
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4. retro_sscr_509 98.06 80.47
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Download FASTA sequences of all ENSSSCG00000003367 retrocopies