RetrogeneDB ID: | retro_tbel_3235 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_134530:114868..115366(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMA16 | ||
Ensembl ID: | ENSTBEG00000017224 | ||
Aliases: | None | ||
Description: | translation machinery associated 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25638] |
Percent Identity: | 92.77 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LKNEKALRLNLIGEKLQWFQSHLDPHKGGYSKRDACELIERYLNRFSGELEQIELHNSIRDRQGRRHCSR |
LKNEKALRLNLIGEKLQWFQSHLDPHKGGYSKRDACELIERYLN.FSGELEQIELHNSIRDRQG.RHCSR | |
Retrocopy | LKNEKALRLNLIGEKLQWFQSHLDPHKGGYSKRDACELIERYLN*FSGELEQIELHNSIRDRQGQRHCSR |
Parental | EAVIRQTVARERQQYEGYGLEIPDILNASNLKTFRXXDFDLKKSPNIKMRKICANDAIPKKCKKKTKTVV |
EAVIRQ.VARERQ.YEGY.LEIPDILNASNLKTF...DFDLKK.PN.KMRKICANDAIPKKCKKKTKT.. | |
Retrocopy | EAVIRQMVARERQWYEGYSLEIPDILNASNLKTFQEWDFDLKKLPNMKMRKICANDAIPKKCKKKTKTII |
Parental | TVDKDLEELDLKGESSDSDEEMTAVD |
TVDKDLEELDLKGESSDSDEEMTAVD | |
Retrocopy | TVDKDLEELDLKGESSDSDEEMTAVD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |