Parental gene:

TMA16, ENSG00000198498

Aliases:TMA16, C4orf43
Description:translation machinery associated 16 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:25638]
Organism:Human (Homo sapiens)
Coordinates:4:164415593..164441691(+)


>ENSG00000198498
ATGCCCAAAGCACCAAAGGGAAAAAGTGCAGGACGGGAAAAAAAAGTCATCCATCCATATAGTAGAAAAGCAGCTCAAAT
TACGAGAGAGGCCCACAAACAAGAAAAAAAGGAAAAATTGAAGAATGAAAAGGCCTTGCGTCTCAACCTTGTTGGTGAAA
AACTGCAATGGTTTCAAAATCATCTTGATCCCCAAAAAAAGAGATATTCAAAGAAAGATGCTTGTGAACTAATTGAAAGG
TACTTAAATCGATTCAGCAGTGAGCTGGAGCAGATTGAGTTACATAACAGTATCAGGGACAGGCAGGGGAGGCGGCACTG
TTCCCGGGAGACCGTCATCAAGCAGACGATGGAGCGGGAGCGACAGCAGTTTGAGGGATATGGCCTTGAGATTCCAGACA
TTCTAAATGCAAGTAATCTGAAAACATTTAGGGAATGGGACTTTGATCTGAAGAAATTACCAAACATTAAAATGAGAAAA
ATTTGCGCTAATGATGCAATTCCCAAGACGTGCAAGAGGAAAACTATTATAACTGTAGACCAAGATTTGGGGGAATTGGA
ACTAAACGATGAATCAAGTGATTCAGATGAGGAAATGACTGCAGTGGCCTAA

Library Parental gene expression (RPM)
bodymap2_liver 7 .67 RPM
bodymap2_lung 7 .65 RPM
bodymap2_breast 17 .92 RPM
bodymap2_adipose 21 .51 RPM
bodymap2_adrenal 23 .40 RPM
bodymap2_skeletal_muscle 5 .27 RPM
bodymap2_thyroid 17 .44 RPM
bodymap2_prostate 18 .74 RPM
bodymap2_colon 19 .30 RPM
bodymap2_testis 24 .94 RPM
bodymap2_brain 7 .38 RPM
bodymap2_heart 7 .27 RPM
bodymap2_white_blood_cells 18 .33 RPM
bodymap2_lymph_node 14 .89 RPM
bodymap2_ovary 25 .70 RPM
bodymap2_kidney 13 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000006702 ortholog_one2one 2 retrogenes
retro_chof_1717, retro_chof_2104,
Cavia porcellus ENSCPOG00000001119 ortholog_one2one 1 retrogene
retro_cpor_444,
Dasypus novemcinctus ENSDNOG00000006820 ortholog_one2one 1 retrogene
retro_dnov_489,
Echinops telfairi ENSETEG00000009734 ortholog_one2one 1 retrogene
retro_etel_1378,
Gorilla gorilla ENSGGOG00000025324 ortholog_one2one 1 retrogene
retro_ggor_713,
Macropus eugenii ENSMEUG00000001134 ortholog_one2one 3 retrogenes
retro_meug_1830, retro_meug_1895, retro_meug_396,
Macaca mulatta ENSMMUG00000004482 ortholog_one2many 2 retrogenes
retro_mmul_184, retro_mmul_276,
Monodelphis domestica ENSMODG00000002170 ortholog_one2one 1 retrogene
retro_mdom_881,
Mus musculus ENSMUSG00000025591 ortholog_one2one 2 retrogenes
retro_mmus_299, retro_mmus_329,
Nomascus leucogenys ENSNLEG00000006466 ortholog_one2one 2 retrogenes
retro_nleu_1631, retro_nleu_2590,
Otolemur garnettii ENSOGAG00000001860 ortholog_one2one 1 retrogene
retro_ogar_3308,
Pongo abelii ENSPPYG00000015167 ortholog_one2one 1 retrogene
retro_pabe_329,
Pan troglodytes ENSPTRG00000023618 ortholog_one2one 2 retrogenes
retro_ptro_294, retro_ptro_3035,
Rattus norvegicus ENSRNOG00000014188 ortholog_one2one 3 retrogenes
retro_rnor_2309, retro_rnor_845, retro_rnor_846,
Sorex araneus ENSSARG00000003780 ortholog_one2one 1 retrogene
retro_sara_168,
Ictidomys tridecemlineatus ENSSTOG00000024763 ortholog_one2one 3 retrogenes
retro_itri_1085, retro_itri_1372, retro_itri_715,
Tupaia belangeri ENSTBEG00000017224 ortholog_one2one 7 retrogenes
retro_tbel_168, retro_tbel_2196, retro_tbel_2345, retro_tbel_2474, retro_tbel_3235, retro_tbel_3987, retro_tbel_4393,
Tarsius syrichta ENSTSYG00000008284 ortholog_one2one 1 retrogene
retro_tsyr_686,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_378 84.43 50.41
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2. retro_hsap_879 78.10 84.30
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Download FASTA sequences of all ENSG00000198498 retrocopies