RetrogeneDB ID:

retro_ttru_1229

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_107757:35792..36259(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:NDUFAB1
Ensembl ID:ENSTTRG00000005258
Aliases:None
Description:NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa [Source:HGNC Symbol;Acc:7694]


Retrocopy-Parental alignment summary:






>retro_ttru_1229
ATGGCAGCTACTGTCCTTTGCGCCTGTGTCCACCGACTGCCTGCGGCCTTTGTGCTGCTGCCCAGGCTGCTCATGCTGGC
CATGGCCCAGCCACTCAGCACTACCCTTTTCCCCACGGGGGCCCAGAGGAGGCCTGGGGCTCCACAGTTGGCCTCACTGC
TTGTGCAGTTTCCAGTTGGAGTTACACAGCTGTGCCCCCAGTATAGTGAGGCACTCCTTTGACATTAGAGGGGATCAAGG
ACCCTGTCCTTTACGTCTTGAAACTCTATGACAAGATTGACCCAGAAAGGCTCTCAGTAAATTCCCATTTTATGAAAGAT
CTGGGCTTAGACAGTTTGGACTGAGTGGGGATTATAATGGCCATGGAACATGAATTGGGGTTTGAAATTCTTGATGTAGA
TGCAGAGAAGTTAATGTGCCCACAAGAAATTGTAGATTACATTGCAGATAAGAAGGATGCATATGAA

ORF - retro_ttru_1229 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.43 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMAARVLWVCVRRLPAAFAPLPRLPTLAAARSLCTTLFPAGARARSWAPHPASVLTQVPGGVTPLCRQYSD
MAA.VL..CV.RLPAAF..LPRL..LA.A..L.TTLFP.GA..R..AP..AS.L.Q.P.GVT.LC.QYS.
RetrocopyMAATVLCACVHRLPAAFVLLPRLLMLAMAQPLSTTLFPTGAQRRPGAPQLASLLVQFPVGVTQLCPQYSE
ParentalA-PPLTLEGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLM
A..PLTLEGIKD.VLYVLKLYDKIDPE.LSVNSHFMKDLGLDSLD.V.IIMAME.E.GFEI.D.DAEKLM
RetrocopyA<TPLTLEGIKDPVLYVLKLYDKIDPERLSVNSHFMKDLGLDSLD*VGIIMAMEHELGFEILDVDAEKLM
ParentalCPQEIVDYIADKKDVYE
CPQEIVDYIADKKD.YE
RetrocopyCPQEIVDYIADKKDAYE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1229 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1229 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 38 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000143041 retrocopy
Canis familiaris ENSCAFG000000176673 retrocopies
Choloepus hoffmanni ENSCHOG000000035582 retrocopies
Callithrix jacchus ENSCJAG000000206162 retrocopies
Cavia porcellus ENSCPOG000000120382 retrocopies
Dasypus novemcinctus ENSDNOG000000171225 retrocopies
Felis catus ENSFCAG000000132413 retrocopies
Loxodonta africana ENSLAFG000000010321 retrocopy
Macropus eugenii ENSMEUG000000126813 retrocopies
Macaca mulatta ENSMMUG000000205221 retrocopy
Monodelphis domestica ENSMODG000000163521 retrocopy
Mustela putorius furoENSMPUG000000121422 retrocopies
Mus musculus ENSMUSG000000308696 retrocopies
Otolemur garnettii ENSOGAG000000055622 retrocopies
Rattus norvegicus ENSRNOG000000181292 retrocopies
Tursiops truncatus ENSTTRG00000005258 2 retrocopies
retro_ttru_1229 , retro_ttru_989,



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