RetrogeneDB ID: | retro_cpor_728 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_25:5770730..5771171(-) | ||
Located in intron of: | ENSCPOG00000004486 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAB1 | ||
Ensembl ID: | ENSCPOG00000012038 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.83 % |
Parental protein coverage: | 94.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VRRLPSALVPP-SRLPTLALARTLSTALCAARTQTRLGAAQLALAFAQVPGRIPQFCRQYSDAPPLTLEG |
V...P.ALV.P..RLPTLALARTLSTALC...TQ.R.G..Q.A...AQ.PGRIPQFCRQ.SDAPPLTLE. | |
Retrocopy | VHCMPWALVLP<TRLPTLALARTLSTALCPSGTQMRPGVTQPASVLAQAPGRIPQFCRQCSDAPPLTLEE |
Parental | IKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPD-IDAEKLMCPQEIVDY |
IKD.VLYV..LY.KIDP.KL.VNSHFMK.LGL.SLD.VE.IM..EDEFGFEIPD.I.AEKLMCPQEIVDY | |
Retrocopy | IKDQVLYVSELYEKIDPKKLLVNSHFMKYLGLESLDPVESIMPTEDEFGFEIPD>IEAEKLMCPQEIVDY |
Parental | IADKKDVYE |
..DKK..YE | |
Retrocopy | TSDKKNIYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .46 RPM |
SRP017611_kidney | 0 .00 RPM | 83 .96 RPM |
SRP017611_liver | 0 .00 RPM | 55 .93 RPM |
SRP040447_lung | 0 .00 RPM | 19 .70 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 115 .06 RPM |