RetrogeneDB ID: | retro_rnor_1353 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 18:47442906..47443334(+) | ||
Located in intron of: | ENSRNOG00000017488 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufab1 | ||
Ensembl ID: | ENSRNOG00000018129 | ||
Aliases: | None | ||
Description: | acyl carrier protein, mitochondrial [Source:RefSeq peptide;Acc:NP_001099764] |
Percent Identity: | 54.48 % |
Parental protein coverage: | 92.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | LPAAFAPLPRLPTLALARPLSTILCPEGIWRRTGTLQPTLALAQVPGTVTHLCRQYSDAPPLTLEGIRDR |
L.A.....P.LP.......LS..LCPEG...R..TL.P.L.L..V.G.VTHL....SD...LTLE.I.D. | |
Retrocopy | LSARVCSCPSLPYWPWLK-LSPTLCPEGMCKRPRTLHPSLMLSWVLGMVTHL*C*DSDTLHLTLEEIKDK |
Parental | VLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGF-EIPDIDAEKLMCPQEIVDYIADK |
VL.V.KLYD..D.EK.SVNS.FMKDLG...L.Q.E.I.AM.D..G..EIPD..AEKLM.PQE...YIA.K | |
Retrocopy | VLNV*KLYD*VDQEKRSVNSCFMKDLGSGGLGQPEFILAMGDSVGL<EIPDGGAEKLMYPQETAEYIARK |
Parental | KDVYD |
K.VY. | |
Retrocopy | KNVYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 37 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 70 .41 RPM |
SRP017611_liver | 0 .13 RPM | 32 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Mus musculus | retro_mmus_1724 |