Parental gene:

NDUFAB1, ENSCJAG00000020616

Aliases:None
Description:NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa [Source:HGNC Symbol;Acc:7694]
Organism:Marmoset (Callithrix jacchus)
Coordinates:12:22475550..22486317(-)


>ENSCJAG00000020616
ATGGCGTCTCGTGTCCTTTCCTTCTGTGTCCGCCGCCTGCCTGCGGCCTTCGCGCCGCTGCCCCGGGTCTCCATGCTGGC
CGCCGCCCAGCCTTTCAGCACCGCTCTGTGCTCCGCGGGGACCCGGACGAGGCCCGGGCCTTCGCAACCGGCCTCGGTGC
TCGCGCAGGTTCCGGGTAGAGTTACACAGTTGTGCCGCCAGTATTGCGAAGCGCCCCCTTTGACATTAGAGGGCATCCAG
GACCGTGTTCTTTACGTATTGAAACTCTATGACAAGATTGACCCAGAGAAGCTTTCCGTAAATTCTCATTTTATGAAAGA
CCTGGGCTTAGACAGTTTGGACCAAGTGGAGATTATCATGGCCATGGAAGACGAATTTGGGTTTGAAATTCCTGATTTAG
ATGCGGAAAAGTTAATGTGTCCACAAGAAATTGTAGATTACATTGCAGATAAGAAGGATGTATATGAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 7 .29 RPM
SRP051959_skeletal_muscle 31 .86 RPM
SRP051959_lymph_node 7 .15 RPM
SRP051959_lung 7 .63 RPM
SRP051959_liver 16 .16 RPM
SRP051959_kidney 16 .99 RPM
SRP051959_heart 34 .20 RPM
SRP051959_colon 11 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000014304 possible_ortholog 1 retrogene
retro_amel_1692,
Canis familiaris ENSCAFG00000017667 possible_ortholog 3 retrogenes
retro_cfam_1738, retro_cfam_1821, retro_cfam_450,
Choloepus hoffmanni ENSCHOG00000003558 possible_ortholog 2 retrogenes
retro_chof_1517, retro_chof_2498,
Cavia porcellus ENSCPOG00000012038 ortholog_one2many 2 retrogenes
retro_cpor_728, retro_cpor_767,
Dasypus novemcinctus ENSDNOG00000017122 possible_ortholog 5 retrogenes
retro_dnov_1450, retro_dnov_1733, retro_dnov_2024, retro_dnov_89, retro_dnov_911,
Felis catus ENSFCAG00000013241 possible_ortholog 3 retrogenes
retro_fcat_1104, retro_fcat_1181, retro_fcat_2012,
Homo sapiens ENSG00000004779 ortholog_one2one 1 retrogene
retro_hsap_3484,
Gorilla gorilla ENSGGOG00000006320 ortholog_one2many 1 retrogene
retro_ggor_2349,
Loxodonta africana ENSLAFG00000001032 possible_ortholog 1 retrogene
retro_lafr_330,
Macropus eugenii ENSMEUG00000012681 ortholog_one2many 3 retrogenes
retro_meug_1780, retro_meug_303, retro_meug_830,
Microcebus murinus ENSMICG00000007778 ortholog_one2one 2 retrogenes
retro_mmur_1193, retro_mmur_120,
Macaca mulatta ENSMMUG00000020522 ortholog_one2many 1 retrogene
retro_mmul_101,
Monodelphis domestica ENSMODG00000016352 ortholog_one2many 1 retrogene
retro_mdom_389,
Mustela putorius furo ENSMPUG00000012142 possible_ortholog 2 retrogenes
retro_mputfur_1135, retro_mputfur_466,
Mus musculus ENSMUSG00000030869 ortholog_one2many 6 retrogenes
retro_mmus_1724, retro_mmus_2073, retro_mmus_2188, retro_mmus_2947, retro_mmus_3094, retro_mmus_3332,
Oryctolagus cuniculus ENSOCUG00000008457 possible_ortholog 1 retrogene
retro_ocun_1712,
Otolemur garnettii ENSOGAG00000005562 ortholog_one2one 2 retrogenes
retro_ogar_2916, retro_ogar_325,
Pongo abelii ENSPPYG00000007192 ortholog_one2one 1 retrogene
retro_pabe_2879,
Pan troglodytes ENSPTRG00000007889 ortholog_one2one 1 retrogene
retro_ptro_2358,
Rattus norvegicus ENSRNOG00000018129 ortholog_many2many 2 retrogenes
retro_rnor_1353, retro_rnor_2058,
Sus scrofa ENSSSCG00000010795 possible_ortholog 1 retrogene
retro_sscr_1017,
Ictidomys tridecemlineatus ENSSTOG00000024657 ortholog_one2one 2 retrogenes
retro_itri_281, retro_itri_916,
Tursiops truncatus ENSTTRG00000005258 possible_ortholog 2 retrogenes
retro_ttru_1229, retro_ttru_989,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2635 92.99 100.00
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2. retro_cjac_3099 93.70 81.41
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Download FASTA sequences of all ENSCJAG00000020616 retrocopies