RetrogeneDB ID: | retro_rnor_2058 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:61373095..61373374(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufab1 | ||
Ensembl ID: | ENSRNOG00000018129 | ||
Aliases: | None | ||
Description: | acyl carrier protein, mitochondrial [Source:RefSeq peptide;Acc:NP_001099764] |
Percent Identity: | 84.95 % |
Parental protein coverage: | 59.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | THLCRQYSDAPPLTLEGIRDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIP |
.HLCRQY.D.PPLTLEGI.DRVLYVLKLYDKID.EK.SVNSHFMKD.GL..LDQVEIIMAMED.FGFEIP | |
Retrocopy | SHLCRQYNDSPPLTLEGIKDRVLYVLKLYDKIDSEKRSVNSHFMKDQGLNNLDQVEIIMAMEDKFGFEIP |
Parental | DIDAEKLMCPQEIVDYIADKKDV |
.ID.EKL.CPQEIVD.IADKKDV | |
Retrocopy | AIDSEKLLCPQEIVDHIADKKDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 37 .75 RPM |
SRP017611_kidney | 0 .00 RPM | 70 .41 RPM |
SRP017611_liver | 0 .07 RPM | 32 .14 RPM |