RetrogeneDB ID: | retro_dnov_2024 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_42873:39461..39890(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFAB1 | ||
Ensembl ID: | ENSDNOG00000017122 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1, 8kDa [Source:HGNC Symbol;Acc:7694] |
Percent Identity: | 65.73 % |
Parental protein coverage: | 91.67 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | SVAFTPLPLAPRLFAARPLSIALCPAGIRTGLVVLQPVSVLTQVPGKVTQLCRQYSDAPPLTLEGIKDRV |
S..F...P.....F.A..LSIAL...GI.TGLV..Q.VSVLTQVPGKVT.LC.QYSD.PPLTLEGIKDRV | |
Retrocopy | SCSFYLCPPPVHGFYAAQLSIALSSTGIQTGLVAPQTVSVLTQVPGKVT*LCLQYSDVPPLTLEGIKDRV |
Parental | LYVLKLYDKIDPEKXXXXXHFMKDLGLDSLDXXXXXXXXXXXXXFEIPDIDAEKLMCPQEIVDYIADKKD |
LYVLK..DKI.PEK.....HFMKDL.LDS.D.............FEIPDID.EKL.CPQEIVDYIADKKD | |
Retrocopy | LYVLKFCDKIGPEKLSVNSHFMKDLDLDS*DQVEIIMVLED*FGFEIPDIDDEKLICPQEIVDYIADKKD |
Parental | VYE |
V.E | |
Retrocopy | VFE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 60 .87 RPM |
SRP012922_cerebellum | 0 .00 RPM | 29 .69 RPM |
SRP012922_heart | 0 .00 RPM | 119 .03 RPM |
SRP012922_kidney | 0 .00 RPM | 61 .60 RPM |
SRP012922_liver | 0 .00 RPM | 24 .61 RPM |
SRP012922_lung | 0 .00 RPM | 22 .60 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 106 .27 RPM |
SRP012922_spleen | 0 .00 RPM | 24 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014304 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000017667 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003558 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020616 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012038 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000017122 | 5 retrocopies | |
Felis catus | ENSFCAG00000013241 | 3 retrocopies | |
Loxodonta africana | ENSLAFG00000001032 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012681 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000020522 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000016352 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012142 | 2 retrocopies | |
Mus musculus | ENSMUSG00000030869 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000005562 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018129 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000010795 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005258 | 2 retrocopies |