RetrogeneDB ID: | retro_fcat_1104 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:92985689..92986102(+) | ||
Located in intron of: | ENSFCAG00000023792 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000013241 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.87 % |
Parental protein coverage: | 87.66 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LPRVPTLAAVRPLSNTLCPAGARTRPGVPHPASILVSVP--VTQLCRQYSDAPPLTLEGIKDRVLYVLKL |
LP..PTLA....LS..LCP..A.TR......A..L...P..VTQ...QY.D.PPLTLE.IKD..LY.LKL | |
Retrocopy | LPKSPTLAKAWLLSTILCPPRAWTRTVALRVALVLRQFPGTVTQVGCQYNDMPPLTLERIKDHILYGLKL |
Parental | YDKIDPEKLSVNSHFMK-DLGLDSLDQVEIIMAMEDEFGF-EIPDTDAEKLMCPQEIVDYIADKKDVYE |
.DK.DPEKL..NSH.MK....LD.LDQVE.IM.MED.FG..EIPDTD.EK.M.PQEIVDY.ADK.DVYE | |
Retrocopy | KDKTDPEKL*INSHLMKRPNSLDRLDQVETIMDMEDDFGL<EIPDTDTEKVMHPQEIVDYNADKEDVYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 23 .41 RPM |
SRP017611_kidney | 0 .41 RPM | 47 .61 RPM |
SRP017611_liver | 0 .20 RPM | 27 .29 RPM |