RetrogeneDB ID: retro_ttru_1623

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_74277:262..697(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UBE2V2
• Ensembl ID: ENSTTRG00000008325
• Aliases: None
• Description: ubiquitin-conjugating enzyme E2 variant 2 [Source:HGNC Symbol;Acc:12495]

Sequence

>retro_ttru_1623
ATGGCGGTCTCCACAGGCGTTAAAGTTCCTCGTAATTTTCGCTTGTTGGAAGAACTTGAAGAAGGACAAAAAGGAGTAGG
CGATGGTACGGTTAGCTGGGGCCTGGAAGATGATGAAGATATGACACTTACAAGGTGGACAGGCATGATTATTGGGCCAC
CAAGGACAAATTATGAAAACAGAATATATAGCCTGAAAGTAGAATGTGGACCTAAATACCCAGAAGCACCTCCATCAGTT
AGATTTGTAAACAAAATTAATATGAACGGAGTAAATAATTCCAGTGGAATGGTGGATGCACGGAGCATACCAGTGTTAGC
AAAATGGCAGAACTCATACAGCATTAAAGTTGTATTTCAAGAGCTAAGACGTCTAATGATGTCCAAAGAAAATATGAAGC
TTCCACAGCCACCAGAAGGACAAACATACAACAAT

Alignment

ORF - retro_ttru_1623 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.62 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG
          MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG
Retrocopy MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG

Parental  PKYPEAPPSVRFVTKINMNGVNNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG
          PKYPEAPPSVRFV.KINMNGVNNSSGMVDARSIPVLAKWQNSYSIKVV.QELRRLMMSKENMKLPQPPEG
Retrocopy PKYPEAPPSVRFVNKINMNGVNNSSGMVDARSIPVLAKWQNSYSIKVVFQELRRLMMSKENMKLPQPPEG

Parental  QTYNN
          QTYNN
Retrocopy QTYNN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1623 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1623 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 21 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000032182	1 retrocopy	retro_cjac_814,
Loxodonta africana	ENSLAFG00000017749	1 retrocopy	retro_lafr_1168,
Macropus eugenii	ENSMEUG00000016581	1 retrocopy	retro_meug_2093,
Monodelphis domestica	ENSMODG00000010191	10 retrocopies	retro_mdom_1065, retro_mdom_1151, retro_mdom_1167, retro_mdom_1435, retro_mdom_1660, retro_mdom_173, retro_mdom_1979, retro_mdom_736, retro_mdom_786, retro_mdom_979,
Mus musculus	ENSMUSG00000022674	4 retrocopies	retro_mmus_1385, retro_mmus_189, retro_mmus_2048, retro_mmus_2770,
Oryctolagus cuniculus	ENSOCUG00000006933	1 retrocopy	retro_ocun_5,
Procavia capensis	ENSPCAG00000000293	1 retrocopy	retro_pcap_138,
Sus scrofa	ENSSSCG00000022190	1 retrocopy	retro_sscr_524,
Tursiops truncatus	ENSTTRG00000008325	1 retrocopy	retro_ttru_1623 ,