RetrogeneDB ID: | retro_vpac_627 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_8413:2910..3495(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LSM12 | ||
Ensembl ID: | ENSVPAG00000011145 | ||
Aliases: | None | ||
Description: | LSM12 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26407] |
Percent Identity: | 93.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIIN |
.AAPPGEYFSVGSQVSC.TCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIIN | |
Retrocopy | VAAPPGEYFSVGSQVSCWTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIIN |
Parental | DRTETPPPLASLNVSKLASKARTEKEEKLSQAYEISAGVSLEGQXXXXXXXXXIKDCKWQEKNIVVMEEV |
DRTETPPPLASLNVSKLASKARTEKEEKLSQAY.ISAGVSLEGQ.........IKDCKWQEKNIVVMEEV | |
Retrocopy | DRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEV |
Parental | VITPPYQVENCKGKEGSALSHVRKIVEKHFRDVESQKILQRSQAQQPQKEATLSS |
VITPPYQVENCKGKEGSALSHVRKIVEKHFRDVESQKILQRSQAQQPQKEATLSS | |
Retrocopy | VITPPYQVENCKGKEGSALSHVRKIVEKHFRDVESQKILQRSQAQQPQKEATLSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014379 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000008374 | 1 retrocopy | |
Felis catus | ENSFCAG00000029083 | 1 retrocopy | |
Homo sapiens | ENSG00000161654 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005202 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000007501 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006804 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020922 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000010489 | 2 retrocopies | |
Oryzias latipes | ENSORLG00000011310 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020894 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012523 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000011145 | 1 retrocopy |
retro_vpac_627 ,
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