Parental gene:

LSM12, ENSCAFG00000014379

Aliases:None
Description:LSM12 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26407]
Organism:Dog (Canis familiaris)
Coordinates:9:19306460..19327862(+)


>ENSCAFG00000014379
CGGCTTTCGCCCGCTGCTGCCGCCGCCGCCGCCGGCCGCGGCTGCTCTCCCAAGATGGCGGCTCCTCCGGGCGAGTACTT
CAGCGTTGGGAGCCAGGTGTCGTGCCGGACGTGCCAGGAGCAGCGGCTGCAGGGCGAGGTGGTAGCCTTCGACTACCAGT
CCAAAATGCTGGCTTTAAAATGTCCCTCTTCCAGTGGAAAGCCCAACCATGCAGATATCTTGCTCATAAACTTACAGTAT
GTTTCAGAAGTGGAAATAATTAATGACCGAACAGAAACCCCTCCTCCCCTAGCTTCACTCAATGTTAGTAAGCTTGCCAG
CAAAGCACGGACAGAGAAGGAGGAGAAGCTGAGCCAGGCCTATGCAATCAGCGCTGGTGTTTCCCTAGAGGGCCAGCAGC
TCTTCCAGACCATACACAAGACCATTAAAGACTGTAAATGGCAAGAAAAAAACATCGTAGTCATGGAAGAAGTTGTTATT
ACACCCCCATATCAAGTGGAAAACTGTAAAGGCAAAGAGGGGAGTGCACTGAGCCATGTACGCAAAATAGTTGAAAAACA
TTTTAGAGACGTGGAAAGCCAAAAGATACTGCAGCGTTCACAAGCCCAGCAACCACAGAAGGAGGCTGCCCTGTCATCCT
GA

Library Parental gene expression (RPM)
SRP012049_cerebellum 19 .40 RPM
SRP017611_brain 12 .07 RPM
SRP017611_kidney 12 .08 RPM
SRP017611_liver 5 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Echinops telfairi ENSETEG00000008374 ortholog_one2many 1 retrogene
retro_etel_21,
Felis catus ENSFCAG00000029083 ortholog_one2one 1 retrogene
retro_fcat_787,
Homo sapiens ENSG00000161654 ortholog_one2one 1 retrogene
retro_hsap_4041,
Loxodonta africana ENSLAFG00000005202 ortholog_one2one 1 retrogene
retro_lafr_906,
Macropus eugenii ENSMEUG00000007501 ortholog_one2one 1 retrogene
retro_meug_1462,
Macaca mulatta ENSMMUG00000006804 ortholog_one2one 1 retrogene
retro_mmul_3,
Mus musculus ENSMUSG00000020922 ortholog_one2one 1 retrogene
retro_mmus_2683,
Otolemur garnettii ENSOGAG00000010489 ortholog_one2one 2 retrogenes
retro_ogar_1771, retro_ogar_2447,
Oryzias latipes ENSORLG00000011310 ortholog_one2many 1 retrogene
retro_olat_12,
Rattus norvegicus ENSRNOG00000020894 ortholog_one2one 1 retrogene
retro_rnor_2845,
Tupaia belangeri ENSTBEG00000012523 ortholog_one2many 2 retrogenes
retro_tbel_3062, retro_tbel_60,
Vicugna pacos ENSVPAG00000011145 ortholog_one2one 1 retrogene
retro_vpac_627,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_312 63.24 92.96
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2. retro_cfam_1843 73.15 50.23
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Download FASTA sequences of all ENSCAFG00000014379 retrocopies