ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATCA miRNA* AGGATGAGTGAAGAGGATG mismatches: 4 bulges: 2 |
pre-miRNA
CGGCGGCGGCGGCGAGGAGGAGGAGGATGAGTGAAGAGGATGATCTGAGCGGAGAGGAGTTTAGGAGGAAAGGTGANNGCGTTATTNGCAAGCAGAAAGG
GTTTCCTGAGGCAGAGAGTCANGCTGTAGTTTTGACAAATCAGTCGAATTCTCTGNTAGAGCAAATAAAAAACAGAGCAAAGCCGAGTTTTTAATCTAAT
GTTATTACTACTACATAAATCTGCTTTGCTTTGAATATCATCATCATCATCATCATCATCATCATCGGGTAAATAGAG
dot-bracket secondary structure
..((....))..(((.((.((.((.(((((((((.((.((((.((.((((((((.(((.((((..((....(((((..((((((((.((...(((.((..
..)).)))..)).))..((....(((.((.((((((......))))))....))..))).))..((.((((((...((...))...)))))).)).))))
))..))))).))...))))))).)))))))).)).)))).)).))))..))))).)).)).)).)))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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CGGCGGCGGCGGCGAGGAGGAGGAGGATGAGTGAAGAGGATGATCTGAGCGGAGAGGAGTTTAGGAGGAAAGGTGANNGCGTTATTNGCAAGCAGAAAGG
GTTTCCTGAGGCAGAGAGTCANGCTGTAGTTTTGACAAATCAGTCGAATTCTCTGNTAGAGCAAATAAAAAACAGAGCAAAGCCGAGTTTTTAATCTAAT
GTTATTACTACTACATAAATCTGCTTTGCTTTGAATATCATCATCATCATCATCATCATCATCATCGGGTAAATAGAG
dot-bracket secondary structure
..((....))..(((.((.((.((.(((((((((.((.((((.((.((((((((.(((.((((..((....(((((..((((((((.((...(((.((..
..)).)))..)).))..((....(((.((.((((((......))))))....))..))).))..((.((((((...((...))...)))))).)).))))
))..))))).))...))))))).)))))))).)).)))).)).))))..))))).)).)).)).)))...........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
