ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR444
source: miRNEST
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGCCTCATGCTT miRNA* GCTTGAGACAGCAACTGCACA mismatches: 2 bulges: 0 |
pre-miRNA
CGGAGTCAGCAAGCTTGAGACAGCAACTGCACAACTTGCAAGAAAGTCACGATTATGAAGACCCATAGATTTTGTAACTTCCTTGAAAGTAATGCAGTTG
TTGCCTCATGCTTGGTGCCACC
dot-bracket secondary structure
.((...((.(((((.((((.(((((((((((..((((.((((.((((.(((((((((......)))))...)))).)))).)))).))))..))))))))
))).)))).))))).))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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CGGAGTCAGCAAGCTTGAGACAGCAACTGCACAACTTGCAAGAAAGTCACGATTATGAAGACCCATAGATTTTGTAACTTCCTTGAAAGTAATGCAGTTG
TTGCCTCATGCTTGGTGCCACC
dot-bracket secondary structure
.((...((.(((((.((((.(((((((((((..((((.((((.((((.(((((((((......)))))...)))).)))).)))).))))..))))))))
))).)))).))))).))))...
SIMILARITIES| miRBase hvu-MIR444b: 2e-64 PMRD tae-miR2024a: 4e-53 microPC miR444: 1e-53 | UniProt no hits RFAM MIR444: 0.0000000000005 | most similar mature miRNAs |
Identical with: hvu-MIR444b from miRBase (MNEST041894) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
