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Species belonging to selected taxon:
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
ABOUT THIS RECORD
ID:
MNEST001020
species:
Hordeum vulgare
miRNA family:
MIR1135
source:
miRNEST
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGCGACAAGTAATTCCGAAT
miRNA*
CCGGAATATTTGTCACAAGA
mismatches:
3
bulges:
1
View larger
pre-miRNA
CAAACGAATACTCCCTCTGT
CCGGAATATTTGTCACAAGA
ACAGATGTATCTAGATGTATTTTAGTTTTAAATACATCATTTTGTATCCATTT
ATGCGAC
AAGTAATTCCGAAT
TGAAAGGAGTACACGACCA
dot-bracket secondary structure
....((..((((((.((.((
.(((((((((((((.((.((
(..((((((....(((((((((.......)))))))))....))))))..)))
.)).)))
)))).)))))).))
.))..))))))..))....
SIMILARITIES
miRBase
tae-MIR1136
:
0.0000000001
PMRD
ata-miR1122
:
0.00000000003
microPC
miR1128
:
0.000000000002
UniProt
no hits
RFAM
MIR1122: 4e-20
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
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