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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001021
species: Hordeum vulgare
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCTG

miRNA*
 GAGCTCCTATCATTCCAATGA

mismatches: 3
bulges: 0
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pre-miRNA
 GTTTTGGATTTGGTTTGGAGGTGGAGCTCCTATCATTCCAATGAAGGGTCTACCGGAAGGGTTTGTGCAGCTGCTTGTTCATGGTTCCCACTATCCTATC
TCCATTAGAACACGAGGAGATAGGCTTGTGGTTTGCATGATCGAGGAGCCGCTTCGATCCCTCGCTGACCGCTGTTTGGATTGAAGGGAGCTCTGCATCT
TGATCTATTACTAAT

dot-bracket secondary structure
((..((((((......(((.(((((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...((((((
(((............)))))))))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))))).)))
.))))))..))....


SIMILARITIES
miRBase hvu-MIR159a: 4e-98

PMRD hvv-miR159b: 9e-96

microPC miR319: 6e-32		UniProt no hits

RFAM MIR159: 1e-24		most similar mature miRNAs

Identical with: hvv-miR159b from PMRD (MNEST048657)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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