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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001022
species: Hordeum vulgare
miRNA family: miR159a
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAGCTCCTATCATTCCAATGA

miRNA*
 TTTGGATTGAAGGGAGCTCTG

mismatches: 5
bulges: 0
View larger
pre-miRNA
 TTTGGATTTGGTTTGGAGGTGGAGCTCCTATCATTCCAATGAAGGGTCTACCGGAAGGGTTTGTGCAGCTGCTTGTTCATGGTTCCCACTATCCTATCTC
CATTAGAACACGAGGAGATAGGCTTGTGGTTTGCATGATCGAGGAGCCGCTTCGATCCCTCGCTGACCGCTGTTTGGATTGAAGGGAGCTCTGCATCTTG
ATCTATTACTA

dot-bracket secondary structure
....(((..((((.(((.(((((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...((((((((
(............)))))))))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))))).))).)
))).)))....


SIMILARITIES
miRBase hvu-MIR159a: 3e-98

PMRD hvv-miR159b: 8e-96

microPC miR319: 6e-32		UniProt no hits

RFAM MIR159: 1e-24		most similar mature miRNAs

Identical with: hvv-miR159b from PMRD (MNEST048657)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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