miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST001022
species: Hordeum vulgare
miRNA family: miR159a
source: miRNEST

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAGCTCCTATCATTCCAATGA

miRNA*
TTTGGATTGAAGGGAGCTCTG

mismatches: 5
bulges: 0

View larger
pre-miRNA
TTTGGATTTGGTTTGGAGGTGGAGCTCCTATCATTCCAATGAAGGGTCTACCGGAAGGGTTTGTGCAGCTGCTTGTTCATGGTTCCCACTATCCTATCTC
CATTAGAACACGAGGAGATAGGCTTGTGGTTTGCATGATCGAGGAGCCGCTTCGATCCCTCGCTGACCGCTGTTTGGATTGAAGGGAGCTCTGCATCTTG
ATCTATTACTA


dot-bracket secondary structure
....(((..((((.(((.(((((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...((((((((
(............)))))))))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))))).))).)
))).)))....



SIMILARITIES
miRBase hvu-MIR159a: 3e-98

PMRD hvv-miR159b: 8e-96

microPC miR319: 6e-32
UniProt no hits

RFAM MIR159: 1e-24
most similar mature miRNAs

Identical with: hvv-miR159b from PMRD (MNEST048657)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record





Liczniki na strone;