ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCATCCCAAAATAAGTGA miRNA* ACTTTTTCTGGGACAGAGGAA mismatches: 4 bulges: 0 |
pre-miRNA
ATTAAGTACTCCCTCCATCCCAAAATAAGTGACCACTTTGGATTCAAAATTTGTCCCAAAATAAGTGACCACTTTAGAGTAGTACTAGTCTCATCAACTA
CTTCTAATTCAAATTTCTTACAATCTTATCCCCAACTACCCTCTCACTCCCAAACAACACTCATTTAATAGGGGCCATCTAGGTCATTTACCTCCCCCTC
ATAATTTGGCCATAAGTAGTAAAGCGGTCACTTTTTCTGGGACAGAGGAAGTAAAAGT
dot-bracket secondary structure
......((((.((((..(((((.((.((((((((.((((((((.......((((....((((...(((.....((((((((((.............))))
).))))).))).))))...))))....))))...(((((..........(((((..........(((..(((((......((((.....)))).))))).
.))))))))......))))))))).)))))))).)).)))))..)))).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATTAAGTACTCCCTCCATCCCAAAATAAGTGACCACTTTGGATTCAAAATTTGTCCCAAAATAAGTGACCACTTTAGAGTAGTACTAGTCTCATCAACTA
CTTCTAATTCAAATTTCTTACAATCTTATCCCCAACTACCCTCTCACTCCCAAACAACACTCATTTAATAGGGGCCATCTAGGTCATTTACCTCCCCCTC
ATAATTTGGCCATAAGTAGTAAAGCGGTCACTTTTTCTGGGACAGAGGAAGTAAAAGT
dot-bracket secondary structure
......((((.((((..(((((.((.((((((((.((((((((.......((((....((((...(((.....((((((((((.............))))
).))))).))).))))...))))....))))...(((((..........(((((..........(((..(((((......((((.....)))).))))).
.))))))))......))))))))).)))))))).)).)))))..)))).)))).....
SIMILARITIES| miRBase no hits PMRD hpr-miR1120: 0.00001 microPC miR1439: 0.00001 | UniProt no hits RFAM MIR1122: 0.0000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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