miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lactuca perennis



ABOUT THIS RECORD

ID: MNEST001301
species: Lactuca perennis
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCATCA

miRNA*
 ATGGTGGTGGTGGTGGTGGTG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TAGTTCCACTTCAATTGGCATGCGAATACAATATTCAAAGAACCCGTTTGGGAAACGGAAGGATGGTGGTGGTGGTGGTGGTGGGTACCCAGTGTCGAAT
GGATCACTGGCGGTTGTTAGTTACCAATAGCTGGAAGGGGATGTACTCTGTTTTTTCTCTATGGTTTGACAAAAAGAACATACTATTACTCATAGGATGC
ATAATGGTGGTGGGCATGCATCCATTTCATCATCATCATCATCATCATCAAGTCATGATCATGCTCATGATCATGCTCATGAACAATGCATTAGCATATA
TCACTT

dot-bracket secondary structure
..((.(((.......))).))..(((((...))))).......((((((...))))))...((((((((((((((((((((((((((.((((((((....
.)).))))))((((((((.......))))))))..((((((...((...))...))))))(((((.((..........)).)))))))))))..((((((
((.............))))))))...)))))))))))))))))))).(((((.(((((((((....)))))))))))..)))...((((....))))...
......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;