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Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001308
species: Lactuca saligna
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACACACA

mismatches: 2
bulges: 1
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pre-miRNA
 CCAACAAGGGCATAACTCCATAGGAGTGACACTAAGAACACACATGGTTGAATTGCTATCTCCACTGCATATTCATATGTTGTACAGTACAAATTTTCGA
TGCACATACAGTTGTTTGTGAGACATTGTCTACCATCCATTTGTGTTCTCAGGTCACCCCTTCGGAGCACCCTGTTTCCTT

dot-bracket secondary structure
..((((.(((.....((((..(((.(((((.((.((((((((.((((.((((((((..........))).))))).(((.((.(((((........((..
..((((.((....)).)))).)).))))).)).))))))).)))))))).))))))).)))..))))..))))))).....


SIMILARITIES
miRBase aqc-MIR398a: 0.0000006

PMRD aqc-miR398a: 0.0000006

microPC miR398: 4e-76		UniProt no hits

RFAM MIR398: 0.00004		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST045213)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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