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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001308
species: Lactuca saligna
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACACACA

mismatches: 2
bulges: 1
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pre-miRNA
 CCAACAAGGGCATAACTCCATAGGAGTGACACTAAGAACACACATGGTTGAATTGCTATCTCCACTGCATATTCATATGTTGTACAGTACAAATTTTCGA
TGCACATACAGTTGTTTGTGAGACATTGTCTACCATCCATTTGTGTTCTCAGGTCACCCCTTCGGAGCACCCTGTTTCCTT

dot-bracket secondary structure
..((((.(((.....((((..(((.(((((.((.((((((((.((((.((((((((..........))).))))).(((.((.(((((........((..
..((((.((....)).)))).)).))))).)).))))))).)))))))).))))))).)))..))))..))))))).....


SIMILARITIES
miRBase aqc-MIR398a: 0.0000006

PMRD aqc-miR398a: 0.0000006

microPC miR398: 4e-76		UniProt no hits

RFAM MIR398: 0.00004		most similar mature miRNAs

Identical with: miR398 from microPC (MNEST045213)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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