miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001314
species: Lactuca sativa
miRNA family: MIRf1009
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGTTTGTTTTTGGCTGCCTT

miRNA*
 GGTACAGTGTTGAAGAAATGAAG

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GGGGTACAGTGTTGAAGAAATGAAGTTTGAAGATTTAGGTGAAGGAGGGGGCGAGATGGTGTACTTTGGGTTTGTCAAGGGTGGAAGTGGTTGTGGGGTG
GCTCCACGATCAACTCTGCATAGAAGCTGTTGGAGTGAAACTGAGAATGAGAATGAGGATGAGTGAGAATGAGAAAATTAGAGTCTGTGAAGTGGAATGT
CTAGTGTGGTTGTGAAGCTGTTTGCGTCTGTCTGGCTGAGAGAGAGTGTGTGTGTGTTTTTGCTTCTAATTTTGTGTGTATTTACTATCTGACTGTACCA
TGTTGTCTTTCGTTTGTTTTTGGCTGCCTTTTGTTTTGACTAAGACACATCTGTATGAT

dot-bracket secondary structure
...((((((((((..........((((..(((((..(((((.(((((.(((((((.((((.((((((((((((.......(((((..(((((((((((..
.)))))))))))..)))))....)))))..)))))))..))))...((....))..((((.((((((.(((..(((((((((..((....))((((...)
)))....(((...(((((....(((((((.(((.....))).))).)))).....))))).))))))))))))...))).))))))))))(((...((..
.)).))).))))))).)))))...)))))...)))))))))..)))))...)))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O65354|DCAM_HELAN: 0.00000000005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;