miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa



ABOUT THIS RECORD

ID: MNEST001314
species: Lactuca sativa
miRNA family: MIRf1009
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGTTTGTTTTTGGCTGCCTT

miRNA*
GGTACAGTGTTGAAGAAATGAAG

mismatches: 4
bulges: 2

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pre-miRNA
GGGGTACAGTGTTGAAGAAATGAAGTTTGAAGATTTAGGTGAAGGAGGGGGCGAGATGGTGTACTTTGGGTTTGTCAAGGGTGGAAGTGGTTGTGGGGTG
GCTCCACGATCAACTCTGCATAGAAGCTGTTGGAGTGAAACTGAGAATGAGAATGAGGATGAGTGAGAATGAGAAAATTAGAGTCTGTGAAGTGGAATGT
CTAGTGTGGTTGTGAAGCTGTTTGCGTCTGTCTGGCTGAGAGAGAGTGTGTGTGTGTTTTTGCTTCTAATTTTGTGTGTATTTACTATCTGACTGTACCA
TGTTGTCTTTCGTTTGTTTTTGGCTGCCTTTTGTTTTGACTAAGACACATCTGTATGAT


dot-bracket secondary structure
...((((((((((..........((((..(((((..(((((.(((((.(((((((.((((.((((((((((((.......(((((..(((((((((((..
.)))))))))))..)))))....)))))..)))))))..))))...((....))..((((.((((((.(((..(((((((((..((....))((((...)
)))....(((...(((((....(((((((.(((.....))).))).)))).....))))).))))))))))))...))).))))))))))(((...((..
.)).))).))))))).)))))...)))))...)))))))))..)))))...)))))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|O65354|DCAM_HELAN: 0.00000000005

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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