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Species belonging to selected taxon:

Lactuca sativa



ABOUT THIS RECORD

ID: MNEST001314
species: Lactuca sativa
miRNA family: MIRf1009
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGTTTGTTTTTGGCTGCCTT

miRNA*
 GGTACAGTGTTGAAGAAATGAAG

mismatches: 4
bulges: 2
View larger
pre-miRNA
 GGGGTACAGTGTTGAAGAAATGAAGTTTGAAGATTTAGGTGAAGGAGGGGGCGAGATGGTGTACTTTGGGTTTGTCAAGGGTGGAAGTGGTTGTGGGGTG
GCTCCACGATCAACTCTGCATAGAAGCTGTTGGAGTGAAACTGAGAATGAGAATGAGGATGAGTGAGAATGAGAAAATTAGAGTCTGTGAAGTGGAATGT
CTAGTGTGGTTGTGAAGCTGTTTGCGTCTGTCTGGCTGAGAGAGAGTGTGTGTGTGTTTTTGCTTCTAATTTTGTGTGTATTTACTATCTGACTGTACCA
TGTTGTCTTTCGTTTGTTTTTGGCTGCCTTTTGTTTTGACTAAGACACATCTGTATGAT

dot-bracket secondary structure
...((((((((((..........((((..(((((..(((((.(((((.(((((((.((((.((((((((((((.......(((((..(((((((((((..
.)))))))))))..)))))....)))))..)))))))..))))...((....))..((((.((((((.(((..(((((((((..((....))((((...)
)))....(((...(((((....(((((((.(((.....))).))).)))).....))))).))))))))))))...))).))))))))))(((...((..
.)).))).))))))).)))))...)))))...)))))))))..)))))...)))))...


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O65354|DCAM_HELAN: 0.00000000005

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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