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Species belonging to selected taxon:

Lactuca sativa



ABOUT THIS RECORD

ID: MNEST001316
species: Lactuca sativa
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAGTTGCCCTG

miRNA*
 GGGCGTCTCTCCTCTGGCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 CGGGGAAGCGAACTAATTGCAGGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAAC
GCTATTTGCCAAAGGAGAGTTGCCCTGTATCTGGTTTGCTTAATCGAGTCAAGAAA

dot-bracket secondary structure
(((..((((((((((..(((((((((.(((((((.(((((((...........((((((((...((((.((.....)).))))...))))))))......
....))))))).))))))).)))))))))..))))))))))..)))..........


SIMILARITIES
miRBase vvi-MIR399c: 0.0000001

PMRD vvi-miR399c: 0.0000001

microPC miR399: 1e-56		UniProt no hits

RFAM mir-399: 0.0001		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046085)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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