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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001316
species: Lactuca sativa
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCCAAAGGAGAGTTGCCCTG

miRNA*
 GGGCGTCTCTCCTCTGGCAGA

mismatches: 2
bulges: 0
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pre-miRNA
 CGGGGAAGCGAACTAATTGCAGGGCGTCTCTCCTCTGGCAGAAAACCCTAATTAATTTTCCCATTGTCGAATGATTTTGGATATATGGAAGATTTAGAAC
GCTATTTGCCAAAGGAGAGTTGCCCTGTATCTGGTTTGCTTAATCGAGTCAAGAAA

dot-bracket secondary structure
(((..((((((((((..(((((((((.(((((((.(((((((...........((((((((...((((.((.....)).))))...))))))))......
....))))))).))))))).)))))))))..))))))))))..)))..........


SIMILARITIES
miRBase vvi-MIR399c: 0.0000001

PMRD vvi-miR399c: 0.0000001

microPC miR399: 1e-56		UniProt no hits

RFAM mir-399: 0.0001		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST046085)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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