miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001329
species: Lactuca sativa
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCA

miRNA*
 CGGCATCTTCAAGATTCACA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 TTTCAAAACCACGAAAGTCATTGGTTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTTAATGGGTAATGAGA
ATCTTGATGATGCTGCATCAGAGATCAATCGACTACATTCCATTTAC

dot-bracket secondary structure
.(((........)))(((((((((((.(((((((((((((.(((((((((.(((.(((.((.((((..((.....))...)))).)).)))...))).))
))))))).))))))))))))).))))))).)))).............


SIMILARITIES
miRBase osa-MIR172d: 0.00000003

PMRD sbi-miR172d: 0.00000003

microPC miR172: 1e-44		UniProt no hits

RFAM mir-172: 0.0000001		most similar mature miRNAs

Identical with: miR172 from microPC (MNEST044791)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;