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Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001329
species: Lactuca sativa
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAATCTTGATGATGCTGCA

miRNA*
CGGCATCTTCAAGATTCACA

mismatches: 2
bulges: 0

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pre-miRNA
TTTCAAAACCACGAAAGTCATTGGTTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTTAATGGGTAATGAGA
ATCTTGATGATGCTGCA
TCAGAGATCAATCGACTACATTCCATTTAC


dot-bracket secondary structure
.(((........)))(((((((((((.(((((((((((((.(((((((((.(((.(((.((.((((..((.....))...)))).)).)))...))).))
))))))).)))))))))
)))).))))))).)))).............



SIMILARITIES
miRBase osa-MIR172d: 0.00000003

PMRD sbi-miR172d: 0.00000003

microPC miR172: 1e-44
UniProt no hits

RFAM mir-172: 0.0000001
most similar mature miRNAs

Identical with: miR172 from microPC (MNEST044791)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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