miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001329
species: Lactuca sativa
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCA

miRNA*
 CGGCATCTTCAAGATTCACA

mismatches: 2
bulges: 0
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pre-miRNA
 TTTCAAAACCACGAAAGTCATTGGTTACTGGTGCGGCATCTTCAAGATTCACATGCCAATATTCAACTCTAGATAAGTTTTTGGTTAATGGGTAATGAGA
ATCTTGATGATGCTGCATCAGAGATCAATCGACTACATTCCATTTAC

dot-bracket secondary structure
.(((........)))(((((((((((.(((((((((((((.(((((((((.(((.(((.((.((((..((.....))...)))).)).)))...))).))
))))))).))))))))))))).))))))).)))).............


SIMILARITIES
miRBase osa-MIR172d: 0.00000003

PMRD sbi-miR172d: 0.00000003

microPC miR172: 1e-44		UniProt no hits

RFAM mir-172: 0.0000001		most similar mature miRNAs

Identical with: miR172 from microPC (MNEST044791)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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