ABOUT THIS RECORDspecies: Lactuca serriola
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCTGT miRNA* AGGCAGTCTTCTTGGCTAA mismatches: 1 bulges: 2 |
pre-miRNA
GGGAAAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGA
CCTTTGTTAGACTGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTAATTTCATGTTAGATCTCCTTTTCT
dot-bracket secondary structure
........(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).
))))))..)))..)))...)))))))))))))))))).))).))))..)).))))))....)))))).)).)).))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGGAAAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGA
CCTTTGTTAGACTGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTAATTTCATGTTAGATCTCCTTTTCT
dot-bracket secondary structure
........(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).
))))))..)))..)))...)))))))))))))))))).))).))))..)).))))))....)))))).)).)).))))))).
SIMILARITIES| miRBase ptc-MIR169k: 0.000000002 PMRD ptc-miR169k: 0.000000002 microPC miR169: 2e-47 | UniProt no hits RFAM MIR169_5: 0.00000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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