miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001342
species: Lactuca serriola
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCCAAGGATGACTTGCCTGT

miRNA*
AGGCAGTCTTCTTGGCTAA

mismatches: 1
bulges: 2

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pre-miRNA
GGGAAAATGAAGAGGGACCTTACATGAAGGGAACAATGTGTTTGGTAGCCAAGGATGACTTGCCTGTTGCTTTCTCTCAAAGGATTTATTTATATCAAGA
CCTTTGTTAGACTGGTTATCAGGCAGTCTTCTTGGCTAACTTGACAATTTCTTCCCTAATTTCATGTTAGATCTCCTTTTCT


dot-bracket secondary structure
........(((((((((.((.((((((((((((.((..((((.((((((((((((.((((.(((((..(((.(((..((((((.(((.........))).
))))))..)))..)))...)))))))))))))))))).))).))))..)).))))))....)))))).)).)).))))))).



SIMILARITIES
miRBase ptc-MIR169k: 0.000000002

PMRD ptc-miR169k: 0.000000002

microPC miR169: 2e-47
UniProt no hits

RFAM MIR169_5: 0.00000004
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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