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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST001353
species: Lactuca virosa
miRNA family: MIR164
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGCACGTGCA

miRNA*
 CATGTGCCCATCTTCGCCATC

mismatches: 4
bulges: 0
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pre-miRNA
 GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATCATGAAGACCTAGAAAAGTTTTGCGTTAAGTAAACCTTGAAGGTGTTAATCCAACG
TACCTAACCTAGCCAAATAGCCTTGAAGTCTAGAGTTCATGGTTTAACCCTTGTACGTTTGTTTGCGATTCACTTGCAGATGTCTGAATAATTTAGCCAC
TTGAGTACTTCAATTACACTCCATTTTGGTAGATGCAACAAGTGAGTTAGTGGTTCATGTGCCCATCTTCGCCATCATGACAAC

dot-bracket secondary structure
..((..((.(((((.((((..(((((((((.(((((((((((((..((...((((....(((.(((((.....))))).)))..))))(((.....)))(
((.(((.((.............(((((((((.((((....((((.((...((((.((..(((((((((.....)))))))))..)).)))))).))))))
)).)).)))))))..............))))).)))..)).))))))))))))).)))))))))..)))).))))).)).))..


SIMILARITIES
miRBase ptc-MIR164e: 7e-17

PMRD ptc-miRf11320-akr: 7e-17

microPC miR164: 0.00000000002		UniProt no hits

RFAM MIR164: 0.000000000000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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