miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa



ABOUT THIS RECORD

ID: MNEST001353
species: Lactuca virosa
miRNA family: MIR164
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA

miRNA*
CATGTGCCCATCTTCGCCATC

mismatches: 4
bulges: 0

View larger
pre-miRNA
GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATCATGAAGACCTAGAAAAGTTTTGCGTTAAGTAAACCTTGAAGGTGTTAATCCAACG
TACCTAACCTAGCCAAATAGCCTTGAAGTCTAGAGTTCATGGTTTAACCCTTGTACGTTTGTTTGCGATTCACTTGCAGATGTCTGAATAATTTAGCCAC
TTGAGTACTTCAATTACACTCCATTTTGGTAGATGCAACAAGTGAGTTAGTGGTTCATGTGCCCATCTTCGCCATCATGACAAC


dot-bracket secondary structure
..((..((.(((((.((((..(((((((((.(((((((((((((..((...((((....(((.(((((.....))))).)))..))))(((.....)))(
((.(((.((.............(((((((((.((((....((((.((...((((.((..(((((((((.....)))))))))..)).)))))).))))))
)).)).)))))))..............))))).)))..)).))))))))))))).)))))))))..)))).))))).)).))..



SIMILARITIES
miRBase ptc-MIR164e: 7e-17

PMRD ptc-miRf11320-akr: 7e-17

microPC miR164: 0.00000000002
UniProt no hits

RFAM MIR164: 0.000000000000001
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;