miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST001353
species: Lactuca virosa
miRNA family: MIR164
source: miRNEST

Taxonomy by NCBI:
Lactuca virosa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGAAGCAGGGCACGTGCA

miRNA*
 CATGTGCCCATCTTCGCCATC

mismatches: 4
bulges: 0
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pre-miRNA
 GATGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAACTCATCATGAAGACCTAGAAAAGTTTTGCGTTAAGTAAACCTTGAAGGTGTTAATCCAACG
TACCTAACCTAGCCAAATAGCCTTGAAGTCTAGAGTTCATGGTTTAACCCTTGTACGTTTGTTTGCGATTCACTTGCAGATGTCTGAATAATTTAGCCAC
TTGAGTACTTCAATTACACTCCATTTTGGTAGATGCAACAAGTGAGTTAGTGGTTCATGTGCCCATCTTCGCCATCATGACAAC

dot-bracket secondary structure
..((..((.(((((.((((..(((((((((.(((((((((((((..((...((((....(((.(((((.....))))).)))..))))(((.....)))(
((.(((.((.............(((((((((.((((....((((.((...((((.((..(((((((((.....)))))))))..)).)))))).))))))
)).)).)))))))..............))))).)))..)).))))))))))))).)))))))))..)))).))))).)).))..


SIMILARITIES
miRBase ptc-MIR164e: 7e-17

PMRD ptc-miRf11320-akr: 7e-17

microPC miR164: 0.00000000002		UniProt no hits

RFAM MIR164: 0.000000000000001		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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