ABOUT THIS RECORDspecies: Linum usitatissimum
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Linum usitatissimum Linum Linaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGGGAACAGACAGAGCATGG miRNA* ATGCACTGCCTCTTCCCTGGCC mismatches: 3 bulges: 1 |
pre-miRNA
GAGGTAAGAAGGAAGACGAGAAAAAAAGAGGCTGGGAACAGACAGAGCATGGATAGAGCTTACTTACAGAAACCCTTTTGTTTTGACCCTTCCCATGCAC
TGCCTCTTCCCTGGCCTTTTTCCCTCTTCTCTTCCACCCTCTTT
dot-bracket secondary structure
((((......((((((.((((...((((((((((((((.((.(((.((((((...(((.......((((((....)))))).......))).)))))).)
)).)).))))).)))))))))...)))).))))))..))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGGTAAGAAGGAAGACGAGAAAAAAAGAGGCTGGGAACAGACAGAGCATGGATAGAGCTTACTTACAGAAACCCTTTTGTTTTGACCCTTCCCATGCAC
TGCCTCTTCCCTGGCCTTTTTCCCTCTTCTCTTCCACCCTCTTT
dot-bracket secondary structure
((((......((((((.((((...((((((((((((((.((.(((.((((((...(((.......((((((....)))))).......))).)))))).)
)).)).))))).)))))))))...)))).))))))..))))...
SIMILARITIES| miRBase ptc-MIR408: 0.00000003 PMRD ptc-miR408: 0.00000003 microPC miR408: 0.00000003 | UniProt no hits RFAM MIR408: 0.0000005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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