miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST001412
species: Lolium perenne
miRNA family: MIRf134
source: miRNEST

Taxonomy by NCBI:
Lolium perenne Lolium Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
ACATGGCTGATTGTCAAGTTC

miRNA*
GCGTTGATTCGTGGCCATCTTG

mismatches: 5
bulges: 1

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pre-miRNA
TACGGCTTCAGGCGTTGATTCGTGGCCATCTTGTAAGGAGGCAAGCTGTTTCGACACTTCGTGCAACATGGCTGATTGTCAAGTTCCAAGCTATC

dot-bracket secondary structure
...(((((..(((.(((((...(((((((.(((((.((((................)))).))))).)))))))...))))))))..)))))...

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt sp|Q8L4D8|IQD31_ARATH: 0.001

RFAM no hits

most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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