ABOUT THIS RECORDspecies: Lolium perenne
miRNA family: MIR1120
source: miRNEST
Taxonomy by NCBI:
Lolium perenne Lolium Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCCCTCCGTCCTATAATAA miRNA* ATTATACGAATGGATGGAGTAA mismatches: 4 bulges: 1 |
pre-miRNA
TATTATTATGTACTCCCTCCGTCCTATAATAATAGCTGTATGATAATATTATAATTGAGATGTTATTAGAACCCGCTACTCCATTATAATATTGCGTATT
GATTGTAATAGCCACCTATTATACGAATGGATGGAGTAAAATATCCC
dot-bracket secondary structure
......(((.((((((.(((.((.(((((((...((((((((.((((((((((((.(((..((...........))..))).))))))))))))..))).
.......)))))....))))))).))..))).))))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTATTATGTACTCCCTCCGTCCTATAATAATAGCTGTATGATAATATTATAATTGAGATGTTATTAGAACCCGCTACTCCATTATAATATTGCGTATT
GATTGTAATAGCCACCTATTATACGAATGGATGGAGTAAAATATCCC
dot-bracket secondary structure
......(((.((((((.(((.((.(((((((...((((((((.((((((((((((.(((..((...........))..))).))))))))))))..))).
.......)))))....))))))).))..))).))))))..)))....
SIMILARITIES| miRBase no hits PMRD no hits microPC miR1436: 0.0004 | UniProt no hits RFAM MIR1122: 0.0005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
