ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR2109
source: miRNEST
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCGGGTGTCTTCGCCTCTGA miRNA* AGAGACGTGACTCCCGCTAC mismatches: 3 bulges: 1 |
pre-miRNA
TTTGGTCGCGAGTAAAATTGTAGCGGGTGTCTTCGCCTCTGAACCTTTGCCTATTGTGCTGTTAACCATTCTCAGCCTGGCTTCAGAGACGTGACTCCCG
CTACGCATTTGCTCGCCATCTC
dot-bracket secondary structure
...(((.(((((((((..(((((((((.(((..((.(((((((.....(((......((((..((...))..))))..)))))))))).)).))).))))
)))))..))))))))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTGGTCGCGAGTAAAATTGTAGCGGGTGTCTTCGCCTCTGAACCTTTGCCTATTGTGCTGTTAACCATTCTCAGCCTGGCTTCAGAGACGTGACTCCCG
CTACGCATTTGCTCGCCATCTC
dot-bracket secondary structure
...(((.(((((((((..(((((((((.(((..((.(((((((.....(((......((((..((...))..))))..)))))))))).)).))).))))
)))))..))))))))).)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
