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Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST001497
species: Manihot esculenta
miRNA family: MIR399
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACCAAAGAAGATTTGCCCCA

miRNA*
 GGGCAATTCTTGCTTTGGCAGT

mismatches: 4
bulges: 1
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pre-miRNA
 ATGTTTATGGGTATGCATTCCTGGGCAATTCTTGCTTTGGCAGTTGGCAACTCATGTTGTAATCAACTACAAAGAGTAGGCCTACTACCAAAGAAGATTT
GCCCCACAATTCAGTCCATACAATT

dot-bracket secondary structure
.(((..(((((..((.(((...((((((.((((.((((((.(((.(((.((((...(((((......))))).))))..))).))).)))))))))).))
))))...))).)).))))))))...


SIMILARITIES
miRBase ptc-MIR399e: 0.00002

PMRD ptc-miR399e: 0.00002

microPC miR399: 1e-41		UniProt no hits

RFAM mir-399: 0.000000007		most similar mature miRNAs

Identical with: miR399 from microPC (MNEST045383)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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