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Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST001498
species: Manihot esculenta
miRNA family: MIR535
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACGACGAGAGAGAGCACAC

miRNA*
 GTGCTCTCTGCCGTCGTCATA

mismatches: 2
bulges: 0
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pre-miRNA
 GTATCTCGTTCTCTTGATTGCCTTAGCTTTGACATAATTGGTTGACGACGAGAGAGAGCACACTTGTTAGCATTCATGCTGTGGTCATGGGCGTCTATAAG
TGTGCTCTCTGCCGTCGTCATACAATATGGTCAAAGAAGGTTTATCTTTACTGGCACATG

dot-bracket secondary structure
)......((.((...(((.(((((..(((((((...((((..((((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))
))))))))))..))))))))..))))...))))))))))))..)))......)).))...


SIMILARITIES
miRBase rco-MIR535: 1.0E-7

PMRD rco-miR535: 1.0E-7

microPC miR535: 3.0E-39		UniProt no hits

RFAM 5MIR535: 2.0E-9		most similar mature miRNAs

Identical with: miR535 from microPC (MNEST045695)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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