miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Hevea brasiliensis, Jatropha curcas, Manihot esculenta



ABOUT THIS RECORD

ID: MNEST001498
species: Manihot esculenta
miRNA family: MIR535
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACGACGAGAGAGAGCACAC

miRNA*
GTGCTCTCTGCCGTCGTCATA

mismatches: 2
bulges: 0

View larger
pre-miRNA
TATCTCGTTCTCTTGATTGCCTTAGCTTTGACATAATTGGTTGACGACGAGAGAGAGCACACTTGTTAGCATTCATGCTGTGGTCATGGGCGTCTATAAG
TGTGCTCTCTGCCGTCGTCATACAATATGGTCAAAGAAGGTTTATCTTTACTGGCACATG


dot-bracket secondary structure
......((.((...(((.(((((..(((((((...((((..((((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))
))))))))))..))))))))..))))...))))))))))))..)))......)).))...



SIMILARITIES
miRBase rco-MIR535: 0.0000001

PMRD rco-miR535: 0.0000001

microPC miR535: 3e-39
UniProt no hits

RFAM MIR535: 0.000000002
most similar mature miRNAs

Identical with: miR535 from microPC (MNEST045695)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;