ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIR535
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGACGAGAGAGAGCACAC miRNA* GTGCTCTCTGCCGTCGTCATA mismatches: 2 bulges: 0 |
pre-miRNA
TATCTCGTTCTCTTGATTGCCTTAGCTTTGACATAATTGGTTGACGACGAGAGAGAGCACACTTGTTAGCATTCATGCTGTGGTCATGGGCGTCTATAAG
TGTGCTCTCTGCCGTCGTCATACAATATGGTCAAAGAAGGTTTATCTTTACTGGCACATG
dot-bracket secondary structure
......((.((...(((.(((((..(((((((...((((..((((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))
))))))))))..))))))))..))))...))))))))))))..)))......)).))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATCTCGTTCTCTTGATTGCCTTAGCTTTGACATAATTGGTTGACGACGAGAGAGAGCACACTTGTTAGCATTCATGCTGTGGTCATGGGCGTCTATAAG
TGTGCTCTCTGCCGTCGTCATACAATATGGTCAAAGAAGGTTTATCTTTACTGGCACATG
dot-bracket secondary structure
......((.((...(((.(((((..(((((((...((((..((((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))
))))))))))..))))))))..))))...))))))))))))..)))......)).))...
SIMILARITIES| miRBase rco-MIR535: 0.0000001 PMRD rco-miR535: 0.0000001 microPC miR535: 3e-39 | UniProt no hits RFAM MIR535: 0.000000002 | most similar mature miRNAs |
Identical with: miR535 from microPC (MNEST045695) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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