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Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST001498
species: Manihot esculenta
miRNA family: MIR535
source: miRNEST

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACGACGAGAGAGAGCACAC

miRNA*
 GTGCTCTCTGCCGTCGTCATA

mismatches: 2
bulges: 0
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pre-miRNA
 TATCTCGTTCTCTTGATTGCCTTAGCTTTGACATAATTGGTTGACGACGAGAGAGAGCACACTTGTTAGCATTCATGCTGTGGTCATGGGCGTCTATAAG
TGTGCTCTCTGCCGTCGTCATACAATATGGTCAAAGAAGGTTTATCTTTACTGGCACATG

dot-bracket secondary structure
......((.((...(((.(((((..(((((((...((((..((((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))
))))))))))..))))))))..))))...))))))))))))..)))......)).))...


SIMILARITIES
miRBase rco-MIR535: 0.0000001

PMRD rco-miR535: 0.0000001

microPC miR535: 3e-39		UniProt no hits

RFAM MIR535: 0.000000002		most similar mature miRNAs

Identical with: miR535 from microPC (MNEST045695)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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