ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGCTCGAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 4 bulges: 0 |
pre-miRNA
CTTTCTCTGAAATGAATTCAAAGGAAGTTTCTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTCTTTGATCCTTTTTTTTTTTCCCTCAAAGTATA
TCCATAGATCTGATCTAAAGCATGTATGGGTATAAGGAGTAGATTGATCATCAGCTATAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTAAAGCTTC
CGTTCTGATTTTTCAAGTTCTGCA
dot-bracket secondary structure
........(((.((((.(((..((((((((.....(((.((((((((..((((((.((((.(((...((.(((((..(((.....((((.......((((
((((((.((((.......)).)).)))))))))).)))).)))..)))))........)).))).)))).))))))..)))))))).)))...)))))))
)....)))...))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CTTTCTCTGAAATGAATTCAAAGGAAGTTTCTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTCTTTGATCCTTTTTTTTTTTCCCTCAAAGTATA
TCCATAGATCTGATCTAAAGCATGTATGGGTATAAGGAGTAGATTGATCATCAGCTATAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTAAAGCTTC
CGTTCTGATTTTTCAAGTTCTGCA
dot-bracket secondary structure
........(((.((((.(((..((((((((.....(((.((((((((..((((((.((((.(((...((.(((((..(((.....((((.......((((
((((((.((((.......)).)).)))))))))).)))).)))..)))))........)).))).)))).))))))..)))))))).)))...)))))))
)....)))...))))..)))....
SIMILARITIES| miRBase aly-MIR166a: 8e-16 PMRD ath-miR166a: 0.0000000000002 microPC miR166: 0.0000000002 | UniProt no hits RFAM mir-166: 0.0000000000009 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
