ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGCTCGAGG miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 4 bulges: 0 |
pre-miRNA
ACTTTCTCTGAAATGAATTCAAAGGAAGTTTCTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTCTTTGATCCTTTTTTTTTTTCCCTCAAAGTATA
TCCATAGATCTGATCTAAAGCATGTATGGGTATAAGGAGTAGATTGATCATCAGCTATAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTAAAGCTTC
CGTTCTGATTTTTCAAGTTCTGCA
dot-bracket secondary structure
)........(((.((((.(((..((((((((.....(((.((((((((..((((((.((((.(((...((.(((((..(((.....((((.......((((
((((((.((((.......)).)).)))))))))).)))).)))..)))))........)).))).)))).))))))..)))))))).)))...)))))))
)....)))...))))..)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTTTCTCTGAAATGAATTCAAAGGAAGTTTCTCTTTTGAGGGGAATGTTGTCTGGCTCGAGGACTCTCTTTGATCCTTTTTTTTTTTCCCTCAAAGTATA
TCCATAGATCTGATCTAAAGCATGTATGGGTATAAGGAGTAGATTGATCATCAGCTATAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATTAAAGCTTC
CGTTCTGATTTTTCAAGTTCTGCA
dot-bracket secondary structure
)........(((.((((.(((..((((((((.....(((.((((((((..((((((.((((.(((...((.(((((..(((.....((((.......((((
((((((.((((.......)).)).)))))))))).)))).)))..)))))........)).))).)))).))))))..)))))))).)))...)))))))
)....)))...))))..)))....
SIMILARITIES| miRBase aly-MIR166a: 8.0E-16 PMRD ath-miR166a: 2.0E-13 microPC miR166: 2.0E-10 | UniProt no hits RFAM 6mir-166: 9.0E-13 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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