ABOUT THIS RECORDspecies: Manihot esculenta
miRNA family: MIRf493
source: miRNEST
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGACCAGGCTTCATTCCCCT miRNA* GGGAATGTTGGCTGGCTCTAG mismatches: 4 bulges: 2 |
pre-miRNA
TGAGTAAAAACTCATTAATGGTTGTTTTTGAAGGGAATGTTGGCTGGCTCTAGGCATTCACAAGTGTGGGAGAAGAAATCGATCAGAAGCAGTGGAAGCT
TTGGACCAGGCTTCATTCCCCTCAATATAATTACCATCTTCTTCTTCTTTT
dot-bracket secondary structure
(((((....)))))...(((((.(((.((((.(((((((..((((((.((.((((.(((((..((.(((..((.....))..)))...)).))))).)))
).)).))).))).))))))).))))...))).)))))..............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAGTAAAAACTCATTAATGGTTGTTTTTGAAGGGAATGTTGGCTGGCTCTAGGCATTCACAAGTGTGGGAGAAGAAATCGATCAGAAGCAGTGGAAGCT
TTGGACCAGGCTTCATTCCCCTCAATATAATTACCATCTTCTTCTTCTTTT
dot-bracket secondary structure
(((((....)))))...(((((.(((.((((.(((((((..((((((.((.((((.(((((..((.(((..((.....))..)))...)).))))).)))
).)).))).))).))))))).))))...))).)))))..............
SIMILARITIES| miRBase vvi-MIR166b: 0.0000000005 PMRD vvi-miR166b: 0.0000000005 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
