ABOUT THIS RECORDspecies: Medicago sativa
miRNA family: MIR393
source: miRNEST
Taxonomy by NCBI:
Medicago sativa Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGTTT miRNA* GCTTGCGAATCCTTTTGCATC mismatches: 3 bulges: 2 |
pre-miRNA
GCACGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAATGGACAGTCTCTAATCTCAAGCTTGCGA
ATCCTTTTGCATCCGTTCAAT
dot-bracket secondary structure
....((((..((.(((((((((((((..((((............((((((((.((.((.....)).))..))))))))............)))).)))).
))))))))).)).))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCACGACGACATCCAAAGGGATCGCATTGTTTCATACTTCCCTATGTCTGTTAGAAGCGCCGTGTCTCCGAATGGACAGTCTCTAATCTCAAGCTTGCGA
ATCCTTTTGCATCCGTTCAAT
dot-bracket secondary structure
....((((..((.(((((((((((((..((((............((((((((.((.((.....)).))..))))))))............)))).)))).
))))))))).)).))))....
SIMILARITIES| miRBase sbi-MIR393: 0.0004 PMRD vvi-miR393b: 0.0004 microPC no hits | UniProt sp|Q9LW29|AFB2_ARATH: 0.00000000000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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