miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Beta vulgaris, Mesembryanthemum crystallinum, Tamarix hispida



ABOUT THIS RECORD

ID: MNEST001545
species: Mesembryanthemum crystallinum
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Mesembryanthemum crystallinum Mesembryanthemum Aizoaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 GTTCAATAAAGCTGTGGGAAG

mismatches: 1
bulges: 0
View larger
pre-miRNA
 ATATCAATACATATGGTCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAATT
TTTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAATA
AAGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTCA

dot-bracket secondary structure
)............(((.(((.((((((((.((((((((((((.((((((((((....(((.((.((((((((((((((...(((((.....(((((((.((
((((.((((((((((.......)))))))))).)))))).....)))))))..))))).)))))))))))))).))........))).)))))))))).)
))))))))))).)))))))).))).)))...........


SIMILARITIES
miRBase lja-MIR396: 3.0E-15

PMRD lja-miR396: 3.0E-15

microPC miR396: 4.0E-33		UniProt no hits

RFAM 6MIR396: 4.0E-12		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;